CRISPRone

CRISPRone report for GCA_000792545.1_AZPAE14994

♦ Seq 1: JTPA01000076.1 Pseudomonas aeruginosa strain AZPAE14994 AZPAE14994_contig_76, whole genome shotgun sequence

⇒Summary: seq-len = 75647 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28335-38354 bp Zoom in on locus 1 x12 x13 CRISPR array Location: 28335-29023 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 28335-29023 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 29284-30258 bp Gene: COG1203:cas3 Type: Type-I Location: 30255-33485 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 33543-34847 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 34834-35817 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 35828-36856 bp Gene: cd09739:cas6f Type: other Location: 36860-37423 bp CRISPR array Location: 37607-38354 bp Num of repeats: 13 Spacers: s12-s23 CRISPR array Location: 37607-38354 bp Num of repeats: 13 Spacers: s12-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28335-29023 bp]: array | spacers
           [Locus range 37607-38354 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTPA01000016.1 Pseudomonas aeruginosa strain AZPAE14994 AZPAE14994_contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 384858 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129349-139616 bp Zoom in on locus 1 x11 x7 CRISPR array Location: 129349-129987 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 129349-129987 bp Num of repeats: 11 Spacers: s1-s10 Gene: pfam09707:cas2 Type: universal Location: 130052-130351 bp Gene: cd09719:cas1 Type: universal Location: 130348-131238 bp Gene: pfam08798:cas6e Type: other Location: 131265-131804 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 131851-132513 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 132516-133658 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 133668-134198 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 134195-135763 bp Gene: cd09641:cas3HD Type: Type-I Location: 135766-138447 bp CRISPR array Location: 139222-139616 bp Num of repeats: 7 Spacers: s11-s16 CRISPR array Location: 139222-139616 bp Num of repeats: 7 Spacers: s11-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 129349-129987 bp]: array | spacers
           [Locus range 139222-139616 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTPA01000045.1 Pseudomonas aeruginosa strain AZPAE14994 AZPAE14994_contig_45, whole genome shotgun sequence

⇒Summary: seq-len = 103913 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88961-89168 bp Zoom in on locus 1 x4 CRISPR array Location: 88961-89168 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 88961-89168 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 88961-89168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JTPA01000028.1 Pseudomonas aeruginosa strain AZPAE14994 AZPAE14994_contig_28, whole genome shotgun sequence

⇒Summary: seq-len = 76544 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61729-62359 bp Zoom in on locus 1 x11 CRISPR array Location: 61729-62359 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 61729-62359 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61729-62359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)