CRISPRone

CRISPRone report for GCA_000792635.1_AZPAE14999

♦ Seq 1: JTOV01000041.1 Pseudomonas aeruginosa strain AZPAE14999 AZPAE14999_contig_41, whole genome shotgun sequence

⇒Summary: seq-len = 13321 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-12612 bp Zoom in on locus 1 x11 x12 x42 CRISPR array Location: 0-620 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 0-620 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 737-1424 bp Num of repeats: 12 Spacers: s11-s21 CRISPR array Location: 737-1424 bp Num of repeats: 12 Spacers: s11-s21 Gene: cd09739:cas6f Type: other Location: 1606-2169 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2173-3201 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3212-4195 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4182-5486 bp Gene: COG1203:cas3 Type: Type-I Location: 5544-8774 bp Gene: cd09718:cas1 Type: universal Location: 8771-9745 bp CRISPR array Location: 10124-12612 bp Num of repeats: 42 Spacers: s22-s62 CRISPR array Location: 10124-12612 bp Num of repeats: 42 Spacers: s22-s62 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-620 bp]: array | spacers
           [Locus range 737-1424 bp]: array | spacers
           [Locus range 10124-12612 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTOV01000051.1 Pseudomonas aeruginosa strain AZPAE14999 AZPAE14999_contig_51, whole genome shotgun sequence

⇒Summary: seq-len = 67703 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-77 bp Zoom in on locus 1 x2 CRISPR array Location: 0-77 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-77 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-77 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTOV01000038.1 Pseudomonas aeruginosa strain AZPAE14999 AZPAE14999_contig_38, whole genome shotgun sequence

⇒Summary: seq-len = 107003 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104822-106290 bp Zoom in on locus 1 x25 CRISPR array Location: 104822-106290 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 104822-106290 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104822-106290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)