CRISPRone

CRISPRone report for GCA_000792675.1_AZPAE15001

♦ Seq 1: JTOT01000016.1 Pseudomonas aeruginosa strain AZPAE15001 AZPAE15001_contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 339628 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45890-56644 bp Zoom in on locus 1 x14 x2 x9 CRISPR array Location: 45890-46711 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 45890-46711 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 46776-47075 bp Gene: cd09719:cas1 Type: universal Location: 47072-47962 bp Gene: pfam08798:cas6e Type: other Location: 47989-48528 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 48575-49237 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 49239-50381 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 50391-50921 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 50918-52486 bp Gene: cd09641:cas3HD Type: Type-I Location: 52489-55170 bp CRISPR array Location: 55944-56033 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 55944-56033 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 56128-56644 bp Num of repeats: 9 Spacers: s15-s22 CRISPR array Location: 56128-56644 bp Num of repeats: 9 Spacers: s15-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45890-46711 bp]: array | spacers
           [Locus range 55944-56033 bp]: array | spacers
           [Locus range 56128-56644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)