CRISPRone

CRISPRone report for GCA_000792765.1_AZPAE15005

♦ Seq 1: JTOP01000004.1 Pseudomonas aeruginosa strain AZPAE15005 AZPAE15005_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 154346 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46526-47034 bp Zoom in on locus 1 x9 CRISPR array Location: 46526-47034 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 46526-47034 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46526-47034 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTOP01000016.1 Pseudomonas aeruginosa strain AZPAE15005 AZPAE15005_contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 278030 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 235535-246120 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 235535-236404 bp Gene: pfam00078:RT Type: other Location: 241313-242581 bp Gene: unk Type: unknown Location: 242731-243129 bp Gene: unk Type: unknown Location: 243313-243492 bp Gene: cls000170:cas4 Type: Type-I Location: 244576-246120 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)