CRISPRone

CRISPRone report for GCA_000792855.1_AZPAE15010

♦ Seq 1: JTOK01000034.1 Pseudomonas aeruginosa strain AZPAE15010 AZPAE15010_contig_34, whole genome shotgun sequence

⇒Summary: seq-len = 103468 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 598-1406 bp Zoom in on locus 1 x14 CRISPR array Location: 598-1406 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 598-1406 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 598-1406 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTOK01000020.1 Pseudomonas aeruginosa strain AZPAE15010 AZPAE15010_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 132388 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103322-108794 bp Zoom in on locus 1 Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 103322-103972 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 103979-105022 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 105022-105777 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 105806-106531 bp Gene: cd09708:DinG Type: Subtype-IV-A Location: 106620-108794 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTOK01000004.1 Pseudomonas aeruginosa strain AZPAE15010 AZPAE15010_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 85177 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61375-68163 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 61375-62406 bp Gene: unk Type: unknown Location: 62851-63741 bp Gene: pfam13280:WYL Type: other Location: 64021-64929 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 64942-68163 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)