CRISPRone

CRISPRone report for GCA_000792945.1_AZPAE15014

♦ Seq 1: JTOG01000007.1 Pseudomonas aeruginosa strain AZPAE15014 AZPAE15014_contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 411552 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 130738-132267 bp Zoom in on locus 1 x26 CRISPR array Location: 130738-132267 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 130738-132267 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 130738-132267 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTOG01000017.1 Pseudomonas aeruginosa strain AZPAE15014 AZPAE15014_contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 70006 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26321-36507 bp Zoom in on locus 1 x7 x15 CRISPR array Location: 26321-26710 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 26321-26710 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09739:cas6f Type: other Location: 26893-27456 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27460-28488 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28499-29482 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29469-30770 bp Gene: COG1203:cas3 Type: Type-I Location: 31181-34411 bp Gene: cd09718:cas1 Type: universal Location: 34408-35382 bp CRISPR array Location: 35640-36507 bp Num of repeats: 15 Spacers: s7-s20 CRISPR array Location: 35640-36507 bp Num of repeats: 15 Spacers: s7-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26321-26710 bp]: array | spacers
           [Locus range 35640-36507 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)