CRISPRone

CRISPRone report for GCA_000793005.1_AZPAE15017

♦ Seq 1: JTOD01000002.1 Pseudomonas aeruginosa strain AZPAE15017 AZPAE15017_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 709044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239722-240170 bp Zoom in on locus 1 x8 CRISPR array Location: 239722-240170 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 239722-240170 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 239722-240170 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTOD01000021.1 Pseudomonas aeruginosa strain AZPAE15017 AZPAE15017_contig_21, whole genome shotgun sequence

⇒Summary: seq-len = 70904 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56371-56699 bp Zoom in on locus 1 x6 CRISPR array Location: 56371-56699 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 56371-56699 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56371-56699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTOD01000023.1 Pseudomonas aeruginosa strain AZPAE15017 AZPAE15017_contig_23, whole genome shotgun sequence

⇒Summary: seq-len = 409457 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 237210-247051 bp Zoom in on locus 1 x12 x9 CRISPR array Location: 237210-237897 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 237210-237897 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 238080-238643 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 238647-239675 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 239686-240732 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 240719-242023 bp Gene: COG1203:cas3 Type: Type-I Location: 242081-245311 bp Gene: cd09718:cas1 Type: universal Location: 245308-246282 bp CRISPR array Location: 246544-247051 bp Num of repeats: 9 Spacers: s12-s19 CRISPR array Location: 246544-247051 bp Num of repeats: 9 Spacers: s12-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 237210-237897 bp]: array | spacers
           [Locus range 246544-247051 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)