CRISPRone

CRISPRone report for GCA_000793025.1_AZPAE15018

♦ Seq 1: JTOC01000045.1 Pseudomonas aeruginosa strain AZPAE15018 AZPAE15018_contig_45, whole genome shotgun sequence

⇒Summary: seq-len = 78902 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38116-38445 bp Zoom in on locus 1 x6 CRISPR array Location: 38116-38445 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38116-38445 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38116-38445 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTOC01000040.1 Pseudomonas aeruginosa strain AZPAE15018 AZPAE15018_contig_40, whole genome shotgun sequence

⇒Summary: seq-len = 75034 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19957-30135 bp Zoom in on locus 1 x10 x12 CRISPR array Location: 19957-20525 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 19957-20525 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 20776-21750 bp Gene: COG1203:cas3 Type: Type-I Location: 21747-24977 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25388-26689 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26676-27659 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27670-28698 bp Gene: cd09739:cas6f Type: other Location: 28702-29265 bp CRISPR array Location: 29449-30135 bp Num of repeats: 12 Spacers: s10-s20 CRISPR array Location: 29449-30135 bp Num of repeats: 12 Spacers: s10-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19957-20525 bp]: array | spacers
           [Locus range 29449-30135 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTOC01000005.1 Pseudomonas aeruginosa strain AZPAE15018 AZPAE15018_contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 551721 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 439498-440247 bp Zoom in on locus 1 x13 CRISPR array Location: 439498-440247 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 439498-440247 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 439498-440247 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)