CRISPRone

CRISPRone report for GCA_000793055.1_AZPAE15020

♦ Seq 1: JTOA01000002.1 Pseudomonas aeruginosa strain AZPAE15020 AZPAE15020_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 478041 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 261841-272353 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 261841-262359 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 261841-262359 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 263132-265813 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 265816-267384 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 267381-267911 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 267921-269063 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 269065-269727 bp Gene: pfam08798:cas6e Type: other Location: 269702-270313 bp Gene: cd09719:cas1 Type: universal Location: 270340-271230 bp Gene: pfam09707:cas2 Type: universal Location: 271227-271526 bp CRISPR array Location: 271591-272353 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 271591-272353 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 261841-262359 bp]: array | spacers
           [Locus range 271591-272353 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTOA01000015.1 Pseudomonas aeruginosa strain AZPAE15020 AZPAE15020_contig_15, whole genome shotgun sequence

⇒Summary: seq-len = 85248 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42291-52876 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 42291-43160 bp Gene: pfam00078:RT Type: other Location: 48069-49337 bp Gene: unk Type: unknown Location: 49487-49885 bp Gene: unk Type: unknown Location: 50069-50248 bp Gene: cls000170:cas4 Type: Type-I Location: 51332-52876 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)