CRISPRone

CRISPRone report for GCA_000793085.1_AZPAE15021

♦ Seq 1: JTNZ01000008.1 Pseudomonas aeruginosa strain AZPAE15021 AZPAE15021_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 118130 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41601-52760 bp Zoom in on locus 1 x32 x12 CRISPR array Location: 41601-43489 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 41601-43489 bp Num of repeats: 32 Spacers: s1-s31 Gene: cd09718:cas1 Type: universal Location: 43750-44724 bp Gene: COG1203:cas3 Type: Type-I Location: 44721-47951 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 48009-49313 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 49300-50283 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 50294-51322 bp Gene: cd09739:cas6f Type: other Location: 51326-51889 bp CRISPR array Location: 52073-52760 bp Num of repeats: 12 Spacers: s32-s42 CRISPR array Location: 52073-52760 bp Num of repeats: 12 Spacers: s32-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41601-43489 bp]: array | spacers
           [Locus range 52073-52760 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTNZ01000020.1 Pseudomonas aeruginosa strain AZPAE15021 AZPAE15021_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 357209 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 199086-208541 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 199086-200162 bp Gene: unk Type: unknown Location: 200973-201254 bp Gene: unk Type: unknown Location: 201307-201525 bp Gene: unk Type: unknown Location: 201931-202512 bp Gene: pfam13280:WYL Type: other Location: 202526-203401 bp Gene: unk Type: unknown Location: 203531-205111 bp Gene: unk Type: unknown Location: 205135-205782 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 206175-208541 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)