CRISPRone

CRISPRone report for GCA_000793105.1_AZPAE15022

♦ Seq 1: JTNY01000026.1 Pseudomonas aeruginosa strain AZPAE15022 AZPAE15022_contig_26, whole genome shotgun sequence

⇒Summary: seq-len = 90482 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38151-48704 bp Zoom in on locus 1 x15 x19 CRISPR array Location: 38151-39014 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38151-39014 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39197-39760 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39764-40792 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40803-41786 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41773-43077 bp Gene: COG1203:cas3 Type: Type-I Location: 43135-46365 bp Gene: cd09718:cas1 Type: universal Location: 46362-47336 bp CRISPR array Location: 47598-48704 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 47598-48704 bp Num of repeats: 19 Spacers: s15-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38151-39014 bp]: array | spacers
           [Locus range 47598-48704 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTNY01000012.1 Pseudomonas aeruginosa strain AZPAE15022 AZPAE15022_contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 371488 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300033-310969 bp Zoom in on locus 1 x12 x17 CRISPR array Location: 300033-300733 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 300033-300733 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 301505-304186 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 304189-305757 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 305754-306284 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 306294-307436 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 307438-308100 bp Gene: pfam08798:cas6e Type: other Location: 308075-308686 bp Gene: cd09719:cas1 Type: universal Location: 308713-309603 bp Gene: pfam09707:cas2 Type: universal Location: 309600-309899 bp CRISPR array Location: 309964-310969 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 309964-310969 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 300033-300733 bp]: array | spacers
           [Locus range 309964-310969 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)