CRISPRone

CRISPRone report for GCA_000793125.1_AZPAE15023

♦ Seq 1: JTNX01000062.1 Pseudomonas aeruginosa strain AZPAE15023 AZPAE15023_contig_62, whole genome shotgun sequence

⇒Summary: seq-len = 84944 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53348-63127 bp Zoom in on locus 1 x13 x8 CRISPR array Location: 53348-54096 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 53348-54096 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 54279-54842 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 54846-55874 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 55885-56868 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 56855-58159 bp Gene: COG1203:cas3 Type: Type-I Location: 58217-61447 bp Gene: cd09718:cas1 Type: universal Location: 61444-62418 bp CRISPR array Location: 62679-63127 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 62679-63127 bp Num of repeats: 8 Spacers: s13-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53348-54096 bp]: array | spacers
           [Locus range 62679-63127 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTNX01000002.1 Pseudomonas aeruginosa strain AZPAE15023 AZPAE15023_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 320808 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257335-258383 bp Zoom in on locus 1 x18 CRISPR array Location: 257335-258383 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 257335-258383 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 257335-258383 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)