CRISPRone

CRISPRone report for GCA_000793165.1_AZPAE15056

♦ Seq 1: JTMQ01000004.1 Pseudomonas aeruginosa strain AZPAE15056 AZPAE15056_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 317591 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124447-125134 bp Zoom in on locus 1 x12 CRISPR array Location: 124447-125134 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 124447-125134 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124447-125134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTMQ01000029.1 Pseudomonas aeruginosa strain AZPAE15056 AZPAE15056_contig_29, whole genome shotgun sequence

⇒Summary: seq-len = 48685 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1260-11215 bp Zoom in on locus 1 x12 x12 CRISPR array Location: 1260-1948 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1260-1948 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 2205-3179 bp Gene: COG1203:cas3 Type: Type-I Location: 3176-6406 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6464-7768 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7755-8738 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8749-9777 bp Gene: cd09739:cas6f Type: other Location: 9781-10344 bp CRISPR array Location: 10528-11215 bp Num of repeats: 12 Spacers: s12-s22 CRISPR array Location: 10528-11215 bp Num of repeats: 12 Spacers: s12-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1260-1948 bp]: array | spacers
           [Locus range 10528-11215 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)