CRISPRone

CRISPRone report for GCA_000793205.1_AZPAE15057

♦ Seq 1: JTMP01000027.1 Pseudomonas aeruginosa strain AZPAE15057 AZPAE15057_contig_27, whole genome shotgun sequence

⇒Summary: seq-len = 64682 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62738-64085 bp Zoom in on locus 1 x23 CRISPR array Location: 62738-64085 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 62738-64085 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62738-64085 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTMP01000042.1 Pseudomonas aeruginosa strain AZPAE15057 AZPAE15057_contig_42, whole genome shotgun sequence

⇒Summary: seq-len = 13401 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100-10600 bp Zoom in on locus 1 x20 x13 CRISPR array Location: 100-1270 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 100-1270 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09718:cas1 Type: universal Location: 1530-2504 bp Gene: COG1203:cas3 Type: Type-I Location: 2501-5731 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5789-7093 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7080-8063 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8074-9102 bp Gene: cd09739:cas6f Type: other Location: 9106-9669 bp CRISPR array Location: 9853-10600 bp Num of repeats: 13 Spacers: s20-s31 CRISPR array Location: 9853-10600 bp Num of repeats: 13 Spacers: s20-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 100-1270 bp]: array | spacers
           [Locus range 9853-10600 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)