CRISPRone

CRISPRone report for GCA_000793295.1_AZPAE15061

♦ Seq 1: JTML01000011.1 Pseudomonas aeruginosa strain AZPAE15061 AZPAE15061_contig_11, whole genome shotgun sequence

⇒Summary: seq-len = 255720 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192358-193106 bp Zoom in on locus 1 x13 CRISPR array Location: 192358-193106 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 192358-193106 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192358-193106 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTML01000027.1 Pseudomonas aeruginosa strain AZPAE15061 AZPAE15061_contig_27, whole genome shotgun sequence

⇒Summary: seq-len = 44789 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 360-6798 bp Zoom in on locus 1 x14 Gene: cd09673:cas3f Type: Subtype-I-F Location: 360-1517 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1928-3229 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3216-4199 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4210-5238 bp Gene: cd09739:cas6f Type: other Location: 5242-5805 bp CRISPR array Location: 5990-6798 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 5990-6798 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5990-6798 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTML01000034.1 Pseudomonas aeruginosa strain AZPAE15061 AZPAE15061_contig_34, whole genome shotgun sequence

⇒Summary: seq-len = 36320 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11292-15413 bp Zoom in on locus 1 x17 Gene: cd09673:cas3f Type: Subtype-I-F Location: 11292-13199 bp Gene: cd09718:cas1 Type: universal Location: 13196-14167 bp CRISPR array Location: 14425-15413 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 14425-15413 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 14425-15413 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)