CRISPRone

CRISPRone report for GCA_000793365.1_AZPAE15065

♦ Seq 1: JTMH01000042.1 Pseudomonas aeruginosa strain AZPAE15065 AZPAE15065_contig_42, whole genome shotgun sequence

⇒Summary: seq-len = 49144 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37350-48982 bp Zoom in on locus 1 x21 x25 CRISPR array Location: 37350-38574 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 37350-38574 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 38758-39321 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39325-40353 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40364-41347 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41334-42635 bp Gene: COG1203:cas3 Type: Type-I Location: 43046-46282 bp Gene: cd09718:cas1 Type: universal Location: 46279-47253 bp CRISPR array Location: 47514-48982 bp Num of repeats: 25 Spacers: s21-s44 CRISPR array Location: 47514-48982 bp Num of repeats: 25 Spacers: s21-s44 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37350-38574 bp]: array | spacers
           [Locus range 47514-48982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTMH01000013.1 Pseudomonas aeruginosa strain AZPAE15065 AZPAE15065_contig_13, whole genome shotgun sequence

⇒Summary: seq-len = 112375 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 290-1278 bp Zoom in on locus 1 x17 CRISPR array Location: 290-1278 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 290-1278 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 290-1278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTMH01000039.1 Pseudomonas aeruginosa strain AZPAE15065 AZPAE15065_contig_39, whole genome shotgun sequence

⇒Summary: seq-len = 74715 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53848-59214 bp Zoom in on locus 1 Gene: cls001593:casR Type: Type-I Location: 53848-54171 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 54283-56673 bp Gene: unk Type: unknown Location: 56699-58177 bp Gene: COG4804:PD-DExK Type: other Location: 58174-59214 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)