CRISPRone

CRISPRone report for GCA_000793385.1_AZPAE15072

♦ Seq 1: JTMA01000009.1 Pseudomonas aeruginosa strain AZPAE15072 AZPAE15072_contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 212177 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147516-159323 bp Zoom in on locus 1 x22 x27 CRISPR array Location: 147516-148805 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 147516-148805 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09718:cas1 Type: universal Location: 149065-150039 bp Gene: COG1203:cas3 Type: Type-I Location: 150036-153266 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 153677-154978 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 154965-155948 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 155959-156987 bp Gene: cd09739:cas6f Type: other Location: 156991-157554 bp CRISPR array Location: 157739-159323 bp Num of repeats: 27 Spacers: s22-s47 CRISPR array Location: 157739-159323 bp Num of repeats: 27 Spacers: s22-s47 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 147516-148805 bp]: array | spacers
           [Locus range 157739-159323 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTMA01000013.1 Pseudomonas aeruginosa strain AZPAE15072 AZPAE15072_contig_13, whole genome shotgun sequence

⇒Summary: seq-len = 526218 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 425122-425751 bp Zoom in on locus 1 x11 CRISPR array Location: 425122-425751 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 425122-425751 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 425122-425751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)