CRISPRone

CRISPRone report for GCA_000793485.1_AZPAE15070

♦ Seq 1: JTMC01000042.1 Pseudomonas aeruginosa strain AZPAE15070 AZPAE15070_contig_42, whole genome shotgun sequence

⇒Summary: seq-len = 194793 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111688-118476 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 111688-114909 bp Gene: pfam13280:WYL Type: other Location: 114922-115830 bp Gene: unk Type: unknown Location: 116110-117000 bp Gene: unk Type: unknown Location: 117135-117452 bp Gene: mkCas0115:csx3 Type: other Location: 117445-118476 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTMC01000014.1 Pseudomonas aeruginosa strain AZPAE15070 AZPAE15070_contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 477217 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 289570-300082 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 289570-290088 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 289570-290088 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 290861-293542 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 293545-295113 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 295110-295640 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 295650-296792 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 296794-297456 bp Gene: pfam08798:cas6e Type: other Location: 297431-298042 bp Gene: cd09719:cas1 Type: universal Location: 298069-298959 bp Gene: pfam09707:cas2 Type: universal Location: 298956-299255 bp CRISPR array Location: 299320-300082 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 299320-300082 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 289570-290088 bp]: array | spacers
           [Locus range 299320-300082 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)