CRISPRone

CRISPRone report for GCA_000793705.1_AZPAE14907

♦ Seq 1: JTSI01000002.1 Pseudomonas aeruginosa strain AZPAE14907 AZPAE14907_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 568271 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 223837-224644 bp Zoom in on locus 1 x14 CRISPR array Location: 223837-224644 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 223837-224644 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 223837-224644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTSI01000016.1 Pseudomonas aeruginosa strain AZPAE14907 AZPAE14907_contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 79612 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37813-49561 bp Zoom in on locus 1 x22 x26 CRISPR array Location: 37813-39101 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 37813-39101 bp Num of repeats: 22 Spacers: s1-s21 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 39284-39847 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39851-40879 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40890-41873 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41860-43161 bp Gene: COG1203:cas3 Type: Type-I Location: 43572-46802 bp Gene: cd09718:cas1 Type: universal Location: 46799-47773 bp CRISPR array Location: 48034-49561 bp Num of repeats: 26 Spacers: s22-s46 CRISPR array Location: 48034-49561 bp Num of repeats: 26 Spacers: s22-s46 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37813-39101 bp]: array | spacers
           [Locus range 48034-49561 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)