CRISPRone

CRISPRone report for GCA_000793785.1_AZPAE14937

♦ Seq 1: JTRE01000036.1 Pseudomonas aeruginosa strain AZPAE14937 AZPAE14937_contig_36, whole genome shotgun sequence

⇒Summary: seq-len = 11821 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1071-11640 bp Zoom in on locus 1 x25 x8 CRISPR array Location: 1071-2543 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 1071-2543 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 2803-3777 bp Gene: COG1203:cas3 Type: Type-I Location: 3774-7004 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7062-8366 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8353-9336 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9347-10375 bp Gene: cd09739:cas6f Type: other Location: 10379-10942 bp CRISPR array Location: 11192-11640 bp Num of repeats: 8 Spacers: s25-s31 CRISPR array Location: 11192-11640 bp Num of repeats: 8 Spacers: s25-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1071-2543 bp]: array | spacers
           [Locus range 11192-11640 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTRE01000014.1 Pseudomonas aeruginosa strain AZPAE14937 AZPAE14937_contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 54867 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53818-54386 bp Zoom in on locus 1 x10 CRISPR array Location: 53818-54386 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 53818-54386 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53818-54386 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)