CRISPRone

CRISPRone report for GCA_000793805.1_AZPAE14908

♦ Seq 1: JTSH01000032.1 Pseudomonas aeruginosa strain AZPAE14908 AZPAE14908_contig_32, whole genome shotgun sequence

⇒Summary: seq-len = 56529 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7620-18525 bp Zoom in on locus 1 x17 x17 CRISPR array Location: 7620-8609 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 7620-8609 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 8866-9837 bp Gene: COG1203:cas3 Type: Type-I Location: 9834-13064 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 13475-14776 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 14763-15746 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 15757-16785 bp Gene: cd09739:cas6f Type: other Location: 16789-17352 bp CRISPR array Location: 17537-18525 bp Num of repeats: 17 Spacers: s17-s32 CRISPR array Location: 17537-18525 bp Num of repeats: 17 Spacers: s17-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7620-8609 bp]: array | spacers
           [Locus range 17537-18525 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTSH01000003.1 Pseudomonas aeruginosa strain AZPAE14908 AZPAE14908_contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 444008 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 380607-381355 bp Zoom in on locus 1 x13 CRISPR array Location: 380607-381355 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 380607-381355 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 380607-381355 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)