CRISPRone

CRISPRone report for GCA_000794005.1_AZPAE14916

♦ Seq 1: JTRZ01000034.1 Pseudomonas aeruginosa strain AZPAE14916 AZPAE14916_contig_34, whole genome shotgun sequence

⇒Summary: seq-len = 67289 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37471-47664 bp Zoom in on locus 1 x13 x5 x7 CRISPR array Location: 37471-38220 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 37471-38220 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 38435-38703 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 38435-38703 bp Num of repeats: 5 Spacers: s13-s16 Gene: cd09739:cas6f Type: other Location: 38886-39449 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39453-40481 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40492-41475 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41462-42766 bp Gene: COG1203:cas3 Type: Type-I Location: 42824-46054 bp Gene: cd09718:cas1 Type: universal Location: 46051-47025 bp CRISPR array Location: 47277-47664 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 47277-47664 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37471-38220 bp]: array | spacers
           [Locus range 38435-38703 bp]: array | spacers
           [Locus range 47277-47664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTRZ01000037.1 Pseudomonas aeruginosa strain AZPAE14916 AZPAE14916_contig_37, whole genome shotgun sequence

⇒Summary: seq-len = 233779 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111055-112462 bp Zoom in on locus 1 x24 CRISPR array Location: 111055-112462 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 111055-112462 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111055-112462 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)