CRISPRone

CRISPRone report for GCA_000794025.1_AZPAE14942

♦ Seq 1: JTQZ01000035.1 Pseudomonas aeruginosa strain AZPAE14942 AZPAE14942_contig_35, whole genome shotgun sequence

⇒Summary: seq-len = 196661 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33625-46715 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 33625-33930 bp Gene: unk Type: unknown Location: 34466-34699 bp Gene: cd09641:cas3HD Type: Type-I Location: 34872-36731 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 46413-46715 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTQZ01000004.1 Pseudomonas aeruginosa strain AZPAE14942 AZPAE14942_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 327002 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 293169-304253 bp Zoom in on locus 1 x20 x14 x6 CRISPR array Location: 293169-294334 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 293169-294334 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 294518-295081 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 295085-296113 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 296124-297107 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 297094-298398 bp Gene: COG1203:cas3 Type: Type-I Location: 298456-301686 bp Gene: cd09718:cas1 Type: universal Location: 301683-302657 bp CRISPR array Location: 302919-303727 bp Num of repeats: 14 Spacers: s20-s32 CRISPR array Location: 302919-303727 bp Num of repeats: 14 Spacers: s20-s32 CRISPR array Location: 303926-304253 bp Num of repeats: 6 Spacers: s33-s37 CRISPR array Location: 303926-304253 bp Num of repeats: 6 Spacers: s33-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 293169-294334 bp]: array | spacers
           [Locus range 302919-303727 bp]: array | spacers
           [Locus range 303926-304253 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)