CRISPRone

CRISPRone report for GCA_000794095.1_AZPAE14935

♦ Seq 1: JTRG01000020.1 Pseudomonas aeruginosa strain AZPAE14935 AZPAE14935_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 68671 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38116-48715 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 38116-39224 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38116-39224 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39407-39970 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39974-41002 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41013-41996 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41983-43284 bp Gene: COG1203:cas3 Type: Type-I Location: 43695-46925 bp Gene: cd09718:cas1 Type: universal Location: 46922-47896 bp CRISPR array Location: 48148-48715 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 48148-48715 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38116-39224 bp]: array | spacers
           [Locus range 48148-48715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTRG01000007.1 Pseudomonas aeruginosa strain AZPAE14935 AZPAE14935_contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 505513 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110579-111327 bp Zoom in on locus 1 x13 CRISPR array Location: 110579-111327 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 110579-111327 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110579-111327 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)