CRISPRone

CRISPRone report for GCA_000794165.1_AZPAE14832

♦ Seq 1: JTVC01000008.1 Pseudomonas aeruginosa strain AZPAE14832 AZPAE14832_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 239844 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125540-136354 bp Zoom in on locus 1 x14 x6 x6 CRISPR array Location: 125540-126361 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 125540-126361 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 126426-126725 bp Gene: COG1518:cas1 Type: universal Location: 126722-127324 bp Gene: cd09719:cas1 Type: universal Location: 127373-127612 bp Gene: pfam08798:cas6e Type: other Location: 127639-128178 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 128225-128887 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 128889-130031 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 130041-130571 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 130568-132136 bp Gene: unk Type: unknown Location: 132139-132282 bp Gene: cd09641:cas3HD Type: Type-I Location: 132331-134820 bp CRISPR array Location: 135593-135926 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 135593-135926 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 136021-136354 bp Num of repeats: 6 Spacers: s19-s23 CRISPR array Location: 136021-136354 bp Num of repeats: 6 Spacers: s19-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125540-126361 bp]: array | spacers
           [Locus range 135593-135926 bp]: array | spacers
           [Locus range 136021-136354 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTVC01000061.1 Pseudomonas aeruginosa strain AZPAE14832 AZPAE14832_contig_61, whole genome shotgun sequence

⇒Summary: seq-len = 107143 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14145-26887 bp Zoom in on locus 1 Gene: cd06127:DEDDh Type: Type-I Location: 14145-14690 bp Gene: unk Type: unknown Location: 14769-15680 bp Gene: unk Type: unknown Location: 22153-22617 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 22742-24727 bp Gene: unk Type: unknown Location: 24770-25819 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 25970-26887 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)