CRISPRone

CRISPRone report for GCA_000794245.1_AZPAE14834

♦ Seq 1: JTVA01000011.1 Pseudomonas aeruginosa strain AZPAE14834 AZPAE14834_contig_11, whole genome shotgun sequence

⇒Summary: seq-len = 285371 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 198088-207543 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 198088-199164 bp Gene: unk Type: unknown Location: 199975-200256 bp Gene: unk Type: unknown Location: 200309-200527 bp Gene: unk Type: unknown Location: 200933-201514 bp Gene: pfam13280:WYL Type: other Location: 201528-202403 bp Gene: unk Type: unknown Location: 202533-204113 bp Gene: unk Type: unknown Location: 204137-204784 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 205177-207543 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTVA01000054.1 Pseudomonas aeruginosa strain AZPAE14834 AZPAE14834_contig_54, whole genome shotgun sequence

⇒Summary: seq-len = 106189 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41409-52568 bp Zoom in on locus 1 x32 x12 CRISPR array Location: 41409-43297 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 41409-43297 bp Num of repeats: 32 Spacers: s1-s31 Gene: cd09718:cas1 Type: universal Location: 43558-44532 bp Gene: COG1203:cas3 Type: Type-I Location: 44529-47759 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 47817-49121 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 49108-50091 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 50102-51130 bp Gene: cd09739:cas6f Type: other Location: 51134-51697 bp CRISPR array Location: 51881-52568 bp Num of repeats: 12 Spacers: s32-s42 CRISPR array Location: 51881-52568 bp Num of repeats: 12 Spacers: s32-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41409-43297 bp]: array | spacers
           [Locus range 51881-52568 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)