CRISPRone

CRISPRone report for GCA_000794265.1_AZPAE14833

♦ Seq 1: JTVB01000014.1 Pseudomonas aeruginosa strain AZPAE14833 AZPAE14833_contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 106004 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53609-64768 bp Zoom in on locus 1 x12 x32 CRISPR array Location: 53609-54297 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 53609-54297 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 54480-55043 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 55047-56075 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 56086-57069 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 57056-58360 bp Gene: COG1203:cas3 Type: Type-I Location: 58418-61648 bp Gene: cd09718:cas1 Type: universal Location: 61645-62619 bp CRISPR array Location: 62881-64768 bp Num of repeats: 32 Spacers: s12-s42 CRISPR array Location: 62881-64768 bp Num of repeats: 32 Spacers: s12-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53609-54297 bp]: array | spacers
           [Locus range 62881-64768 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTVB01000008.1 Pseudomonas aeruginosa strain AZPAE14833 AZPAE14833_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 356285 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 198109-207564 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 198109-199185 bp Gene: unk Type: unknown Location: 199996-200277 bp Gene: unk Type: unknown Location: 200330-200548 bp Gene: unk Type: unknown Location: 200954-201535 bp Gene: pfam13280:WYL Type: other Location: 201549-202424 bp Gene: unk Type: unknown Location: 202554-204134 bp Gene: unk Type: unknown Location: 204158-204805 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 205198-207564 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)