CRISPRone

CRISPRone report for GCA_000794445.1_AZPAE14557

♦ Seq 1: JTXU01000014.1 Pseudomonas aeruginosa strain AZPAE14557 AZPAE14557_contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 302112 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189167-199523 bp Zoom in on locus 1 x17 x12 CRISPR array Location: 189167-190171 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 189167-190171 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 190236-190535 bp Gene: cd09719:cas1 Type: universal Location: 190532-190843 bp Gene: pfam08798:cas6e Type: other Location: 190870-191409 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 191456-192118 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 192120-193262 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 193272-193802 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 193799-195367 bp Gene: cd09641:cas3HD Type: Type-I Location: 195370-198051 bp CRISPR array Location: 198824-199523 bp Num of repeats: 12 Spacers: s17-s27 CRISPR array Location: 198824-199523 bp Num of repeats: 12 Spacers: s17-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 189167-190171 bp]: array | spacers
           [Locus range 198824-199523 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTXU01000006.1 Pseudomonas aeruginosa strain AZPAE14557 AZPAE14557_contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 552963 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 427101-439809 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 427101-428015 bp Gene: unk Type: unknown Location: 428479-428979 bp Gene: unk Type: unknown Location: 428979-429881 bp Gene: mkCas0090:PD-DExK Type: other Location: 429920-430645 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 439033-439809 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTXU01000053.1 Pseudomonas aeruginosa strain AZPAE14557 AZPAE14557_contig_53, whole genome shotgun sequence

⇒Summary: seq-len = 80814 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32876-43375 bp Zoom in on locus 1 x15 x18 CRISPR array Location: 32876-33745 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 32876-33745 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 34005-34979 bp Gene: COG1203:cas3 Type: Type-I Location: 34976-38206 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38264-39568 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39555-40538 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40549-41577 bp Gene: cd09739:cas6f Type: other Location: 41581-42144 bp CRISPR array Location: 42328-43375 bp Num of repeats: 18 Spacers: s15-s31 CRISPR array Location: 42328-43375 bp Num of repeats: 18 Spacers: s15-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32876-33745 bp]: array | spacers
           [Locus range 42328-43375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)