CRISPRone

CRISPRone report for GCA_000794845.1_AZPAE14725

♦ Seq 1: JTWH01000040.1 Pseudomonas aeruginosa strain AZPAE14725 AZPAE14725_contig_40, whole genome shotgun sequence

⇒Summary: seq-len = 66654 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65669-66417 bp Zoom in on locus 1 x13 CRISPR array Location: 65669-66417 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 65669-66417 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 65669-66417 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTWH01000028.1 Pseudomonas aeruginosa strain AZPAE14725 AZPAE14725_contig_28, whole genome shotgun sequence

⇒Summary: seq-len = 48950 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 236-10835 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 236-804 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 236-804 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1055-2029 bp Gene: COG1203:cas3 Type: Type-I Location: 2026-5256 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5667-6968 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6955-7938 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7949-8977 bp Gene: cd09739:cas6f Type: other Location: 8981-9544 bp CRISPR array Location: 9728-10835 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 9728-10835 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 236-804 bp]: array | spacers
           [Locus range 9728-10835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)