CRISPRone

CRISPRone report for GCA_000794965.1_AZPAE14731

♦ Seq 1: JTWB01000037.1 Pseudomonas aeruginosa strain AZPAE14731 AZPAE14731_contig_37, whole genome shotgun sequence

⇒Summary: seq-len = 79038 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10693-11802 bp Zoom in on locus 1 x19 CRISPR array Location: 10693-11802 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 10693-11802 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10693-11802 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTWB01000005.1 Pseudomonas aeruginosa strain AZPAE14731 AZPAE14731_contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 64183 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53316-63574 bp Zoom in on locus 1 x13 x16 CRISPR array Location: 53316-54064 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 53316-54064 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 54247-54810 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 54814-55842 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 55853-56836 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 56823-58127 bp Gene: COG1203:cas3 Type: Type-I Location: 58185-61415 bp Gene: cd09718:cas1 Type: universal Location: 61412-62386 bp CRISPR array Location: 62647-63574 bp Num of repeats: 16 Spacers: s13-s27 CRISPR array Location: 62647-63574 bp Num of repeats: 16 Spacers: s13-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53316-54064 bp]: array | spacers
           [Locus range 62647-63574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)