CRISPRone

CRISPRone report for GCA_000795045.1_AZPAE14811

♦ Seq 1: JTVX01000046.1 Pseudomonas aeruginosa strain AZPAE14811 AZPAE14811_contig_46, whole genome shotgun sequence

⇒Summary: seq-len = 208986 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138240-149758 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 138240-139829 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 138240-139829 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09718:cas1 Type: universal Location: 140090-141064 bp Gene: COG1203:cas3 Type: Type-I Location: 141061-144291 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 144349-145653 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 145640-146623 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 146634-147662 bp Gene: cd09739:cas6f Type: other Location: 147666-148229 bp CRISPR array Location: 148414-149758 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 148414-149758 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 138240-139829 bp]: array | spacers
           [Locus range 148414-149758 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTVX01000028.1 Pseudomonas aeruginosa strain AZPAE14811 AZPAE14811_contig_28, whole genome shotgun sequence

⇒Summary: seq-len = 210815 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147591-148519 bp Zoom in on locus 1 x16 CRISPR array Location: 147591-148519 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 147591-148519 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 147591-148519 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTVX01000035.1 Pseudomonas aeruginosa strain AZPAE14811 AZPAE14811_contig_35, whole genome shotgun sequence

⇒Summary: seq-len = 66212 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18189-26450 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 18189-19901 bp Gene: pfam13280:WYL Type: other Location: 19960-20976 bp Gene: COG2378:WYL Type: other Location: 21718-22560 bp Gene: unk Type: unknown Location: 22610-22978 bp Gene: unk Type: unknown Location: 23044-23691 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 24084-26450 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)