CRISPRone

CRISPRone report for GCA_000795105.1_AZPAE14814

♦ Seq 1: JTVU01000002.1 Pseudomonas aeruginosa strain AZPAE14814 AZPAE14814_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 695262 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 479902-490414 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 479902-480420 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 479902-480420 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 481193-483874 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 483877-485445 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 485442-485972 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 485982-487124 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 487126-487788 bp Gene: pfam08798:cas6e Type: other Location: 487763-488374 bp Gene: cd09719:cas1 Type: universal Location: 488401-489291 bp Gene: pfam09707:cas2 Type: universal Location: 489288-489587 bp CRISPR array Location: 489652-490414 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 489652-490414 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 479902-480420 bp]: array | spacers
           [Locus range 489652-490414 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTVU01000003.1 Pseudomonas aeruginosa strain AZPAE14814 AZPAE14814_contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 151940 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108976-119561 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 108976-109845 bp Gene: pfam00078:RT Type: other Location: 114754-116022 bp Gene: unk Type: unknown Location: 116172-116570 bp Gene: unk Type: unknown Location: 116754-116933 bp Gene: cls000170:cas4 Type: Type-I Location: 118017-119561 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)