CRISPRone

CRISPRone report for GCA_000795115.1_AZPAE14815

♦ Seq 1: JTVT01000014.1 Pseudomonas aeruginosa strain AZPAE14815 AZPAE14815_contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 515311 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 200325-210836 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 200325-201086 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 200325-201086 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 201151-201450 bp Gene: cd09719:cas1 Type: universal Location: 201447-202337 bp Gene: pfam08798:cas6e Type: other Location: 202364-202903 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 202950-203612 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 203614-204756 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 204766-205296 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 205293-206861 bp Gene: cd09641:cas3HD Type: Type-I Location: 206864-209545 bp CRISPR array Location: 210319-210836 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 210319-210836 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200325-201086 bp]: array | spacers
           [Locus range 210319-210836 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTVT01000030.1 Pseudomonas aeruginosa strain AZPAE14815 AZPAE14815_contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 151053 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108673-119258 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 108673-109542 bp Gene: pfam00078:RT Type: other Location: 114451-115719 bp Gene: unk Type: unknown Location: 115869-116267 bp Gene: unk Type: unknown Location: 116451-116630 bp Gene: cls000170:cas4 Type: Type-I Location: 117714-119258 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)