CRISPRone

CRISPRone report for GCA_000795165.1_AZPAE14817

♦ Seq 1: JTVR01000030.1 Pseudomonas aeruginosa strain AZPAE14817 AZPAE14817_contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 49130 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 703-10783 bp Zoom in on locus 1 x17 x9 CRISPR array Location: 703-1691 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 703-1691 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 1951-2925 bp Gene: COG1203:cas3 Type: Type-I Location: 2922-6152 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6210-7514 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7501-8484 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8495-9523 bp Gene: cd09739:cas6f Type: other Location: 9527-10090 bp CRISPR array Location: 10275-10783 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 10275-10783 bp Num of repeats: 9 Spacers: s17-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 703-1691 bp]: array | spacers
           [Locus range 10275-10783 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTVR01000023.1 Pseudomonas aeruginosa strain AZPAE14817 AZPAE14817_contig_23, whole genome shotgun sequence

⇒Summary: seq-len = 115740 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114399-115086 bp Zoom in on locus 1 x12 CRISPR array Location: 114399-115086 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 114399-115086 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114399-115086 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)