CRISPRone

CRISPRone report for GCA_000795565.1_AZPAE13864

♦ Seq 1: JTZI01000017.1 Pseudomonas aeruginosa strain AZPAE13864 AZPAE13864_contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 67726 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36750-48569 bp Zoom in on locus 1 x21 x34 CRISPR array Location: 36750-37978 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 36750-37978 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 38161-38724 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38728-39756 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39767-40750 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40737-42041 bp Gene: COG1203:cas3 Type: Type-I Location: 42099-45329 bp Gene: cd09718:cas1 Type: universal Location: 45326-46300 bp CRISPR array Location: 46562-48569 bp Num of repeats: 34 Spacers: s21-s53 CRISPR array Location: 46562-48569 bp Num of repeats: 34 Spacers: s21-s53 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36750-37978 bp]: array | spacers
           [Locus range 46562-48569 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTZI01000038.1 Pseudomonas aeruginosa strain AZPAE13864 AZPAE13864_contig_39, whole genome shotgun sequence

⇒Summary: seq-len = 157876 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77509-86964 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 77509-79875 bp Gene: unk Type: unknown Location: 80268-80915 bp Gene: unk Type: unknown Location: 80939-82519 bp Gene: pfam13280:WYL Type: other Location: 82649-83524 bp Gene: unk Type: unknown Location: 83538-84119 bp Gene: unk Type: unknown Location: 84525-84743 bp Gene: unk Type: unknown Location: 84796-85077 bp Gene: pfam13280:WYL Type: other Location: 85888-86964 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)