CRISPRone

CRISPRone report for GCA_000795665.1_AZPAE13877

♦ Seq 1: JTZE01000012.1 Pseudomonas aeruginosa strain AZPAE13877 AZPAE13877_contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 282286 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 270174-281632 bp Zoom in on locus 1 x23 x26 CRISPR array Location: 270174-271519 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 270174-271519 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 271703-272266 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 272270-273298 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 273309-274292 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 274279-275583 bp Gene: COG1203:cas3 Type: Type-I Location: 275641-278871 bp Gene: cd09718:cas1 Type: universal Location: 278868-279842 bp CRISPR array Location: 280104-281632 bp Num of repeats: 26 Spacers: s23-s47 CRISPR array Location: 280104-281632 bp Num of repeats: 26 Spacers: s23-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 270174-271519 bp]: array | spacers
           [Locus range 280104-281632 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTZE01000003.1 Pseudomonas aeruginosa strain AZPAE13877 AZPAE13877_contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 119994 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13581-21842 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 13581-15947 bp Gene: unk Type: unknown Location: 16340-16987 bp Gene: unk Type: unknown Location: 17053-17340 bp Gene: COG2378:WYL Type: other Location: 17471-18313 bp Gene: pfam13280:WYL Type: other Location: 19055-20071 bp Gene: mkCas0115:csx3 Type: other Location: 20217-21842 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTZE01000010.1 Pseudomonas aeruginosa strain AZPAE13877 AZPAE13877_contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 433281 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 432116-433043 bp Zoom in on locus 1 x16 CRISPR array Location: 432116-433043 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 432116-433043 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 432116-433043 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)