CRISPRone

CRISPRone report for GCA_000795905.1_AZPAE14718

♦ Seq 1: JTWO01000161.1 Pseudomonas aeruginosa strain AZPAE14718 AZPAE14718_contig_163, whole genome shotgun sequence

⇒Summary: seq-len = 1764 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1529 bp Zoom in on locus 1 x26 CRISPR array Location: 1-1529 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 1-1529 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-1529 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTWO01000007.1 Pseudomonas aeruginosa strain AZPAE14718 AZPAE14718_contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 95898 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54653-62914 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 54653-56263 bp Gene: pfam13280:WYL Type: other Location: 56424-57440 bp Gene: COG2378:WYL Type: other Location: 58182-59024 bp Gene: unk Type: unknown Location: 59155-59442 bp Gene: unk Type: unknown Location: 59577-60155 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 60548-62914 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTWO01000079.1 Pseudomonas aeruginosa strain AZPAE14718 AZPAE14718_contig_79, whole genome shotgun sequence

⇒Summary: seq-len = 48335 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38385-48053 bp Zoom in on locus 1 x23 CRISPR array Location: 38385-39730 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38385-39730 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39914-40477 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40481-41509 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41520-42503 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42490-43794 bp Gene: COG1203:cas3 Type: Type-I Location: 43852-47082 bp Gene: cd09718:cas1 Type: universal Location: 47079-48053 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38385-39730 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JTWO01000055.1 Pseudomonas aeruginosa strain AZPAE14718 AZPAE14718_contig_55, whole genome shotgun sequence

⇒Summary: seq-len = 63374 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62270-63137 bp Zoom in on locus 1 x15 CRISPR array Location: 62270-63137 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 62270-63137 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62270-63137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)