CRISPRone

CRISPRone report for GCA_000795925.1_AZPAE14379

♦ Seq 1: JTYW01000009.1 Pseudomonas aeruginosa strain AZPAE14379 AZPAE14379_contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 48195 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38022-48205 bp Zoom in on locus 1 x14 x2 x11 CRISPR array Location: 38022-38830 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38022-38830 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39013-39576 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39580-40608 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40619-41602 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41589-42893 bp Gene: COG1203:cas3 Type: Type-I Location: 42951-46181 bp Gene: cd09718:cas1 Type: universal Location: 46178-47152 bp CRISPR array Location: 47417-47504 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 47417-47504 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 47577-48205 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 47577-48205 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38022-38830 bp]: array | spacers
           [Locus range 47417-47504 bp]: array | spacers
           [Locus range 47577-48205 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTYW01000040.1 Pseudomonas aeruginosa strain AZPAE14379 AZPAE14379_contig_40, whole genome shotgun sequence

⇒Summary: seq-len = 1744 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27-1195 bp Zoom in on locus 1 x20 CRISPR array Location: 27-1195 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 27-1195 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27-1195 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)