CRISPRone

CRISPRone report for GCA_000796285.1_AZPAE14441

♦ Seq 1: JTYI01000001.1 Pseudomonas aeruginosa strain AZPAE14441 AZPAE14441_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 266225 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54683-65440 bp Zoom in on locus 1 x11 x2 x12 CRISPR array Location: 54683-55323 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 54683-55323 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 55417-55507 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 55417-55507 bp Num of repeats: 2 Spacers: s11-s11 Gene: cd09641:cas3HD Type: Type-I Location: 56281-58962 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 58965-60533 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 60530-61060 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 61070-62212 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 62214-62876 bp Gene: pfam08798:cas6e Type: other Location: 62851-63462 bp Gene: cd09719:cas1 Type: universal Location: 63489-64379 bp Gene: pfam09707:cas2 Type: universal Location: 64376-64675 bp CRISPR array Location: 64740-65440 bp Num of repeats: 12 Spacers: s12-s22 CRISPR array Location: 64740-65440 bp Num of repeats: 12 Spacers: s12-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 54683-55323 bp]: array | spacers
           [Locus range 55417-55507 bp]: array | spacers
           [Locus range 64740-65440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTYI01000036.1 Pseudomonas aeruginosa strain AZPAE14441 AZPAE14441_contig_36, whole genome shotgun sequence

⇒Summary: seq-len = 67760 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36457-48328 bp Zoom in on locus 1 x19 x31 CRISPR array Location: 36457-37566 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 36457-37566 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 37750-38313 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38317-39345 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39356-40339 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40326-41627 bp Gene: COG1203:cas3 Type: Type-I Location: 42038-45268 bp Gene: cd09718:cas1 Type: universal Location: 45265-46239 bp CRISPR array Location: 46500-48328 bp Num of repeats: 31 Spacers: s19-s48 CRISPR array Location: 46500-48328 bp Num of repeats: 31 Spacers: s19-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36457-37566 bp]: array | spacers
           [Locus range 46500-48328 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)