CRISPRone

CRISPRone report for GCA_000796405.1_AZPAE14505

♦ Seq 1: JTYC01000042.1 Pseudomonas aeruginosa strain AZPAE14505 AZPAE14505_contig_42, whole genome shotgun sequence

⇒Summary: seq-len = 65167 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53001-64286 bp Zoom in on locus 1 x23 x22 CRISPR array Location: 53001-54350 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 53001-54350 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 54599-55162 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 55166-56194 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 56205-57188 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 57175-58479 bp Gene: COG1203:cas3 Type: Type-I Location: 58537-61767 bp Gene: cd09718:cas1 Type: universal Location: 61764-62738 bp CRISPR array Location: 62999-64286 bp Num of repeats: 22 Spacers: s23-s43 CRISPR array Location: 62999-64286 bp Num of repeats: 22 Spacers: s23-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53001-54350 bp]: array | spacers
           [Locus range 62999-64286 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTYC01000006.1 Pseudomonas aeruginosa strain AZPAE14505 AZPAE14505_contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 549739 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11753-18875 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 11753-12625 bp Gene: pfam13280:WYL Type: other Location: 12860-13906 bp Gene: pfam13280:WYL Type: other Location: 17880-18875 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTYC01000020.1 Pseudomonas aeruginosa strain AZPAE14505 AZPAE14505_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 312996 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140726-151300 bp Zoom in on locus 1 x8 x15 CRISPR array Location: 140726-141183 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 140726-141183 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 141956-144637 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 144640-146208 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 146205-146735 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 146745-147887 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 147889-148551 bp Gene: pfam08798:cas6e Type: other Location: 148526-149137 bp Gene: cd09719:cas1 Type: universal Location: 149164-150054 bp Gene: pfam09707:cas2 Type: universal Location: 150051-150350 bp CRISPR array Location: 150415-151300 bp Num of repeats: 15 Spacers: s8-s21 CRISPR array Location: 150415-151300 bp Num of repeats: 15 Spacers: s8-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 140726-141183 bp]: array | spacers
           [Locus range 150415-151300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JTYC01000055.1 Pseudomonas aeruginosa strain AZPAE14505 AZPAE14505_contig_55, whole genome shotgun sequence

⇒Summary: seq-len = 42081 bp; # of CRISPR array = 0; # of cas gene = 4  (type I, II, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5206-17126 bp Zoom in on locus 1 Gene: cd12217:csn2 Type: Subtype-II-A Location: 5206-7086 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 7143-10148 bp Gene: unk Type: unknown Location: 10160-12160 bp Gene: unk Type: unknown Location: 12172-12969 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 12972-16205 bp Gene: pfam13280:WYL Type: other Location: 16218-17126 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)