CRISPRone

CRISPRone report for GCA_000796465.1_AZPAE14533

♦ Seq 1: JTXZ01000001.1 Pseudomonas aeruginosa strain AZPAE14533 AZPAE14533_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 68120 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20411-30729 bp Zoom in on locus 1 x9 x21 CRISPR array Location: 20411-20919 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 20411-20919 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09718:cas1 Type: universal Location: 21179-22153 bp Gene: COG1203:cas3 Type: Type-I Location: 22150-25380 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25438-26742 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26729-27712 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27723-28751 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 28755-29318 bp CRISPR array Location: 29502-30729 bp Num of repeats: 21 Spacers: s9-s28 CRISPR array Location: 29502-30729 bp Num of repeats: 21 Spacers: s9-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20411-20919 bp]: array | spacers
           [Locus range 29502-30729 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTXZ01000002.1 Pseudomonas aeruginosa strain AZPAE14533 AZPAE14533_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 389627 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72591-73098 bp Zoom in on locus 1 x9 CRISPR array Location: 72591-73098 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 72591-73098 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 72591-73098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)