CRISPRone

CRISPRone report for GCA_000796605.1_AZPAE14717

♦ Seq 1: JTWP01000072.1 Pseudomonas aeruginosa strain AZPAE14717 AZPAE14717_contig_72, whole genome shotgun sequence

⇒Summary: seq-len = 141849 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132174-140997 bp Zoom in on locus 1 x16 CRISPR array Location: 132174-133117 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 132174-133117 bp Num of repeats: 16 Spacers: s1-s15 Gene: pfam09707:cas2 Type: universal Location: 133182-133481 bp Gene: cd09719:cas1 Type: universal Location: 133478-133789 bp Gene: pfam08798:cas6e Type: other Location: 133816-134355 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 134402-135064 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 135066-136208 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 136218-136748 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 136745-138313 bp Gene: cd09641:cas3HD Type: Type-I Location: 138316-140997 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132174-133117 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTWP01000028.1 Pseudomonas aeruginosa strain AZPAE14717 AZPAE14717_contig_28, whole genome shotgun sequence

⇒Summary: seq-len = 289041 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-569 bp Zoom in on locus 1 x10 CRISPR array Location: 0-569 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 0-569 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-569 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTWP01000049.1 Pseudomonas aeruginosa strain AZPAE14717 AZPAE14717_contig_49, whole genome shotgun sequence

⇒Summary: seq-len = 120339 bp; # of CRISPR array = 2; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62717-82889 bp Zoom in on locus 1 x15 x14 Gene: COG0640:csa3 Type: Subtype-I-A Location: 62717-63025 bp CRISPR array Location: 72630-73499 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 72630-73499 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 73759-74733 bp Gene: COG1203:cas3 Type: Type-I Location: 74730-77960 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 78018-79322 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 79309-80292 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 80303-81331 bp Gene: cd09739:cas6f Type: other Location: 81335-81898 bp CRISPR array Location: 82082-82889 bp Num of repeats: 14 Spacers: s15-s27 CRISPR array Location: 82082-82889 bp Num of repeats: 14 Spacers: s15-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 72630-73499 bp]: array | spacers
           [Locus range 82082-82889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)