CRISPRone

CRISPRone report for GCA_000796745.1_AZPAE12145

♦ Seq 1: JUAR01000001.1 Pseudomonas aeruginosa strain AZPAE12145 AZPAE12145_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 841140 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 648116-658628 bp Zoom in on locus 1 x11 x2 x8 CRISPR array Location: 648116-648756 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 648116-648756 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 648850-648940 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 648850-648940 bp Num of repeats: 2 Spacers: s11-s11 Gene: cd09641:cas3HD Type: Type-I Location: 649713-652394 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 652397-653965 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 653962-654492 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 654502-655644 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 655646-656308 bp Gene: pfam08798:cas6e Type: other Location: 656283-656894 bp Gene: cd09719:cas1 Type: universal Location: 656921-657811 bp Gene: pfam09707:cas2 Type: universal Location: 657808-658107 bp CRISPR array Location: 658172-658628 bp Num of repeats: 8 Spacers: s12-s18 CRISPR array Location: 658172-658628 bp Num of repeats: 8 Spacers: s12-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 648116-648756 bp]: array | spacers
           [Locus range 648850-648940 bp]: array | spacers
           [Locus range 658172-658628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JUAR01000006.1 Pseudomonas aeruginosa strain AZPAE12145 AZPAE12145_contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 97376 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21789-32168 bp Zoom in on locus 1 x15 x16 CRISPR array Location: 21789-22657 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 21789-22657 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 22917-23891 bp Gene: COG1203:cas3 Type: Type-I Location: 23888-27118 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27176-28480 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28467-29450 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29584-30489 bp Gene: cd09739:cas6f Type: other Location: 30493-31056 bp CRISPR array Location: 31240-32168 bp Num of repeats: 16 Spacers: s15-s29 CRISPR array Location: 31240-32168 bp Num of repeats: 16 Spacers: s15-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21789-22657 bp]: array | spacers
           [Locus range 31240-32168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)