CRISPRone

CRISPRone report for GCA_000796785.1_AZPAE12149

♦ Seq 1: JUAN01000040.1 Pseudomonas aeruginosa strain AZPAE12149 AZPAE12149_contig_40, whole genome shotgun sequence

⇒Summary: seq-len = 63353 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62371-63118 bp Zoom in on locus 1 x13 CRISPR array Location: 62371-63118 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 62371-63118 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62371-63118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JUAN01000025.1 Pseudomonas aeruginosa strain AZPAE12149 AZPAE12149_contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 48615 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38184-48379 bp Zoom in on locus 1 x15 x13 CRISPR array Location: 38184-39052 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38184-39052 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39235-39798 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39802-40830 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40841-41824 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41811-43115 bp Gene: COG1203:cas3 Type: Type-I Location: 43173-46403 bp Gene: cd09718:cas1 Type: universal Location: 46400-47374 bp CRISPR array Location: 47632-48379 bp Num of repeats: 13 Spacers: s15-s26 CRISPR array Location: 47632-48379 bp Num of repeats: 13 Spacers: s15-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38184-39052 bp]: array | spacers
           [Locus range 47632-48379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)