CRISPRone

CRISPRone report for GCA_000796825.1_AZPAE12148

♦ Seq 1: JUAO01000039.1 Pseudomonas aeruginosa strain AZPAE12148 AZPAE12148_contig_39, whole genome shotgun sequence

⇒Summary: seq-len = 37996 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19958-30377 bp Zoom in on locus 1 x7 x19 CRISPR array Location: 19958-20346 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 19958-20346 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09718:cas1 Type: universal Location: 20597-21571 bp Gene: COG1203:cas3 Type: Type-I Location: 21568-24798 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25209-26510 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26497-27480 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27491-28519 bp Gene: cd09739:cas6f Type: other Location: 28523-29086 bp CRISPR array Location: 29270-30377 bp Num of repeats: 19 Spacers: s7-s24 CRISPR array Location: 29270-30377 bp Num of repeats: 19 Spacers: s7-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19958-20346 bp]: array | spacers
           [Locus range 29270-30377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JUAO01000021.1 Pseudomonas aeruginosa strain AZPAE12148 AZPAE12148_contig_21, whole genome shotgun sequence

⇒Summary: seq-len = 522988 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 459728-460477 bp Zoom in on locus 1 x13 CRISPR array Location: 459728-460477 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 459728-460477 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 459728-460477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)