CRISPRone

CRISPRone report for GCA_000796905.1_AZPAE12152

♦ Seq 1: JUAK01000032.1 Pseudomonas aeruginosa strain AZPAE12152 AZPAE12152_contig_32, whole genome shotgun sequence

⇒Summary: seq-len = 242388 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25048-35988 bp Zoom in on locus 1 x17 x12 CRISPR array Location: 25048-26053 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 25048-26053 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 26118-26417 bp Gene: cd09719:cas1 Type: universal Location: 26414-27304 bp Gene: pfam08798:cas6e Type: other Location: 27331-27870 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 27917-28579 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 28581-29723 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 29733-30263 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 30260-31828 bp Gene: cd09641:cas3HD Type: Type-I Location: 31831-34512 bp CRISPR array Location: 35288-35988 bp Num of repeats: 12 Spacers: s17-s27 CRISPR array Location: 35288-35988 bp Num of repeats: 12 Spacers: s17-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25048-26053 bp]: array | spacers
           [Locus range 35288-35988 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JUAK01000024.1 Pseudomonas aeruginosa strain AZPAE12152 AZPAE12152_contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 59526 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47189-48056 bp Zoom in on locus 1 x15 CRISPR array Location: 47189-48056 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 47189-48056 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47189-48056 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)