CRISPRone

CRISPRone report for GCA_000796985.1_AZPAE12156

♦ Seq 1: JUAG01000032.1 Pseudomonas aeruginosa strain AZPAE12156 AZPAE12156_contig_32, whole genome shotgun sequence

⇒Summary: seq-len = 36733 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27359-36709 bp Zoom in on locus 1 x6 x8 CRISPR array Location: 27359-27687 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 27359-27687 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09718:cas1 Type: universal Location: 27938-28912 bp Gene: COG1203:cas3 Type: Type-I Location: 28909-32139 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 32197-33501 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 33488-34471 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 34482-35510 bp Gene: cd09739:cas6f Type: other Location: 35514-36077 bp CRISPR array Location: 36262-36709 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 36262-36709 bp Num of repeats: 8 Spacers: s6-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 27359-27687 bp]: array | spacers
           [Locus range 36262-36709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JUAG01000011.1 Pseudomonas aeruginosa strain AZPAE12156 AZPAE12156_contig_11, whole genome shotgun sequence

⇒Summary: seq-len = 38669 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37450-38619 bp Zoom in on locus 1 x20 CRISPR array Location: 37450-38619 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 37450-38619 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37450-38619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)