CRISPRone

CRISPRone report for GCA_000797045.1_AZPAE12410

♦ Seq 1: JUAE01000006.1 Pseudomonas aeruginosa strain AZPAE12410 AZPAE12410_contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 49334 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 887-11028 bp Zoom in on locus 1 x12 x15 CRISPR array Location: 887-1575 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 887-1575 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 1839-2813 bp Gene: COG1203:cas3 Type: Type-I Location: 2810-6040 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6098-7402 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7389-8372 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8383-9411 bp Gene: cd09739:cas6f Type: other Location: 9415-9978 bp CRISPR array Location: 10161-11028 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 10161-11028 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 887-1575 bp]: array | spacers
           [Locus range 10161-11028 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JUAE01000020.1 Pseudomonas aeruginosa strain AZPAE12410 AZPAE12410_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 255702 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62433-63240 bp Zoom in on locus 1 x14 CRISPR array Location: 62433-63240 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 62433-63240 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62433-63240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)