CRISPRone

CRISPRone report for GCA_000797185.1_AZPAE12416

♦ Seq 1: JTZY01000004.1 Pseudomonas aeruginosa strain AZPAE12416 AZPAE12416_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 354540 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 200066-211128 bp Zoom in on locus 1 x17 x14 CRISPR array Location: 200066-201071 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 200066-201071 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 201136-201435 bp Gene: cd09719:cas1 Type: universal Location: 201546-202322 bp Gene: pfam08798:cas6e Type: other Location: 202349-202888 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 202935-203597 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 203599-204741 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 204751-205281 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 205278-206846 bp Gene: cd09641:cas3HD Type: Type-I Location: 206849-209530 bp CRISPR array Location: 210306-211128 bp Num of repeats: 14 Spacers: s17-s29 CRISPR array Location: 210306-211128 bp Num of repeats: 14 Spacers: s17-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200066-201071 bp]: array | spacers
           [Locus range 210306-211128 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTZY01000006.1 Pseudomonas aeruginosa strain AZPAE12416 AZPAE12416_contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 394853 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 331852-332300 bp Zoom in on locus 1 x8 CRISPR array Location: 331852-332300 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 331852-332300 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 331852-332300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)