CRISPRone

CRISPRone report for GCA_000797245.1_AZPAE12418

♦ Seq 1: JTZW01000027.1 Pseudomonas aeruginosa strain AZPAE12418 AZPAE12418_contig_27, whole genome shotgun sequence

⇒Summary: seq-len = 439964 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 377094-377542 bp Zoom in on locus 1 x8 CRISPR array Location: 377094-377542 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 377094-377542 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 377094-377542 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTZW01000012.1 Pseudomonas aeruginosa strain AZPAE12418 AZPAE12418_contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 737130 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 523865-534928 bp Zoom in on locus 1 x14 x17 CRISPR array Location: 523865-524688 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 523865-524688 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09641:cas3HD Type: Type-I Location: 525463-528144 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 528147-529715 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 529712-530242 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 530252-531394 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 531396-532058 bp Gene: pfam08798:cas6e Type: other Location: 532105-532644 bp Gene: cd09719:cas1 Type: universal Location: 532671-533447 bp Gene: pfam09707:cas2 Type: universal Location: 533558-533857 bp CRISPR array Location: 533922-534928 bp Num of repeats: 17 Spacers: s14-s29 CRISPR array Location: 533922-534928 bp Num of repeats: 17 Spacers: s14-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 523865-524688 bp]: array | spacers
           [Locus range 533922-534928 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)